PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006282-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 342aa    MW: 38536.6 Da    PI: 4.4322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006282-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11176219654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  NNU_006282-RA 176 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 219
                    589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-16173240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-12176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9176219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-5177224No hitNo description
Gene3DG3DSA:4.10.280.106.6E-15177236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.15E-4268309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MELNDHGFLE ELLALRRESW ETFPAVGGGM NELFSNGWSF DCFEDNPGLV VGPNSSFEGL  60
ATAMSTSTGT GFDGSLNDVY CPYGDGFWIP EMDDSSSYKK QNDTPSFPSQ EEYPSSLMED  120
DEPGLLGDEL RNFEERPTTC KVEPVQAPEL PVFNMGLCLE RKNRSKKVEG QPSKNLMAER  180
RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL ERIKNLQDEI EVGSNQLNLM  240
SIFKELKPNE ILVRNTPKFD VERRNLDTRI EICCAGKPGL LLSTVTTLEA LGLEIQQCVI  300
SCFNDFAMQA SCSEEMEQRP VVSSEDIKQA LFRNAGYGGR CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185ERRRRKRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254652.10.0PREDICTED: transcription factor bHLH93
SwissprotQ9LSL12e-84BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A061FF701e-162A0A061FF70_THECC; Beta HLH protein 93
STRINGVIT_18s0001g08040.t011e-159(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-85beta HLH protein 93